BEclear: Correct for batch effects in DNA methylation data

Provides some functions to detect and correct for batch effects in DNA methylation data. The core function "BEclear" is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers.

AuthorMarkus Merl, Ruslan Akulenko
Date of publicationNone
MaintainerMarkus Merl <beclear.package@gmail.com>
LicenseGPL-2
Version1.6.0

View on Bioconductor

Files

BEclear/DESCRIPTION
BEclear/NAMESPACE
BEclear/NEWS
BEclear/R
BEclear/R/BEclear.R
BEclear/build
BEclear/build/vignette.rds
BEclear/data
BEclear/data/BEclearCorrected.RData
BEclear/data/BEclearData.RData
BEclear/inst
BEclear/inst/doc
BEclear/inst/doc/BEclear.R
BEclear/inst/doc/BEclear.Rnw
BEclear/inst/doc/BEclear.pdf
BEclear/man
BEclear/man/BEclear-package.Rd BEclear/man/BEclear.Rd BEclear/man/BEclearData.Rd BEclear/man/calcMedians.Rd BEclear/man/calcPvalues.Rd BEclear/man/calcScore.Rd BEclear/man/calcSummary.Rd BEclear/man/clearBEgenes.Rd BEclear/man/correctBatchEffect.Rd BEclear/man/countValuesToPredict.Rd BEclear/man/ex.corrected.data.Rd BEclear/man/findWrongValues.Rd BEclear/man/makeBoxplot.Rd BEclear/man/replaceWrongValues.Rd
BEclear/vignettes
BEclear/vignettes/BEclear.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.