BEclear-example-methylation-data: Example data set for the BEclear-package
In BEclear: Correction of batch effects in DNA methylation data
Description
Usage
Format
References
Description
Example data set for the BEclear-package
Usage
1
Format
An example data matrix that is filled with beta values originally
stemming from breast cancer data from the TCGA portal [1], colnames are
sample ids, rownames are gene names. Generally, beta values are calculated by
dividing the methylated signal by the sum of the unmethylated and methylated
signals from a DNA methylation microrarray. The sample data used here
contains averaged beta values of probes that belong to promoter regions of
single genes. Another possibility would be to use beta values of single
probes, whereby the probe names should then be used instead of the gene names
as rownames of the matrix.
References
\insertRefTCGABEclear
BEclear documentation built on Nov. 8, 2020, 8:07 p.m.
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Description Usage Format References
Description
Example data set for the BEclear-package
Usage
1 |
Format
An example data matrix that is filled with beta values originally stemming from breast cancer data from the TCGA portal [1], colnames are sample ids, rownames are gene names. Generally, beta values are calculated by dividing the methylated signal by the sum of the unmethylated and methylated signals from a DNA methylation microrarray. The sample data used here contains averaged beta values of probes that belong to promoter regions of single genes. Another possibility would be to use beta values of single probes, whereby the probe names should then be used instead of the gene names as rownames of the matrix.
References
\insertRefTCGABEclear
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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