Files in BEclear
Correct for batch effects in DNA methylation data

NEWS
DESCRIPTION
README.md
NAMESPACE
inst/REFERENCES.bib
inst/CITATION
inst/doc/BEclear.Rnw
inst/doc/BEclear.R inst/doc/BEclear.pdf
vignettes/BEclear.Rnw
R/nnz.R R/calcMediansForBatch.R R/calcPositions.R R/combineBlocks.R R/calcPvalsForBatch.R R/gdepoch.R R/BEclear.R R/makeBoxplot.R R/calcMedians.R R/findWrongValues.R R/correctBatchEffect.R R/clearBEgenes.R R/runGradientDescent.R R/calcScore.R R/replaceWrongValues.R R/calcPvalues.R R/calcSummary.R R/imputeMissingData.R R/imputeMissingDataForBlock.R R/calcBlockFrame.R R/loss.R R/dlossp.R R/countValuesToPredict.R man/calcSummary.Rd man/calcMediansForBatch.Rd man/runGradientDescent.Rd man/BEclear-example-sample-data.Rd man/loss.Rd man/findWrongValues.Rd man/calcMedians.Rd man/dlossp.Rd man/clearBEgenes.Rd man/calcPvalsForBatch.Rd man/calcPositions.Rd man/ex.corrected.data.Rd man/nnz.Rd man/gdepoch.Rd man/calcBlockFrame.Rd man/calcScore.Rd man/BEclear-example-methylation-data.Rd man/replaceWrongValues.Rd man/BEclear-package.Rd man/correctBatchEffect.Rd man/imputeMissingDataForBlock.Rd man/makeBoxplot.Rd man/imputeMissingData.Rd man/countValuesToPredict.Rd man/combineBlocks.Rd man/calcPvalues.Rd
build/vignette.rds
build/partial.rdb
tests/testthat.R tests/testthat/test_calcPvalues.R tests/testthat/test_gdepoch.R tests/testthat/test_replaceWrongValues.R tests/testthat/test_runGradientDescent.R tests/testthat/test_findWrongValues.R tests/testthat/test_nnz.R tests/testthat/test_calcMediansBatch.R tests/testthat/test_calcBlockFrame.R tests/testthat/test_calcMedians.R tests/testthat/test_calcPvalsBatch.R tests/testthat/test_calcPositions.R tests/testthat/test_loss.R
data/BEclearData.RData
data/BEclearCorrected.RData
BEclear documentation built on Nov. 1, 2018, 4:29 a.m.