This package provides functions to detect and correct for batch effects in DNA methylation data. The core function for the data imputation is based on latent factor models and can also be used to predict missing values in any other matrix containing real numbers.
# Installation from Bioconductor if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("BEclear")
# Installation of the development version from GitHub if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools") devtools::install_github("David-J-R/BEclear", build_opts = c())
For example code you can either read the vignette on Bioconductor. Or you can open it local, after you installed the BEclear package with following command:
Akulenko, R., Merl, M., & Helms, V. (2016). BEclear: Batch effect detection and adjustment in DNA methylation data. PLoS ONE, 11(8), 1–17. https://doi.org/10.1371/journal.pone.0159921
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.