affylmGUI: GUI for limma package with Affymetrix microarrays

A Graphical User Interface for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

AuthorJames Wettenhall [aut], Ken Simpson [aut], Gordon Smyth [aut], Keith Satterley [ctb], Yifang Hu [ctb]
Date of publicationNone
MaintainerYifang Hu <hu@wehi.edu.au>, Gordon Smyth <smyth@wehi.edu.au>, Keith Satterley <keith@wehi.edu.au>
LicenseGPL (>=2)
Version1.48.0
http://bioinf.wehi.edu.au/affylmGUI/

View on Bioconductor

Files in this package

affylmGUI/DESCRIPTION
affylmGUI/NAMESPACE
affylmGUI/R
affylmGUI/R/PlotOptions.R affylmGUI/R/htmlReport.R affylmGUI/R/main.R affylmGUI/R/normalize.R affylmGUI/R/plot.R affylmGUI/R/toptable.R affylmGUI/R/utility.R affylmGUI/R/zzz.R
affylmGUI/build
affylmGUI/build/vignette.rds
affylmGUI/inst
affylmGUI/inst/CITATION
affylmGUI/inst/doc
affylmGUI/inst/doc/CustMenu.html
affylmGUI/inst/doc/LifeCycle
affylmGUI/inst/doc/LifeCycle/ChooseContrast.png
affylmGUI/inst/doc/LifeCycle/ChooseContrastsParameterization.png
affylmGUI/inst/doc/LifeCycle/ComputeContrastsSelected.png
affylmGUI/inst/doc/LifeCycle/ComputeLinearModelFitSelected.png
affylmGUI/inst/doc/LifeCycle/ContrastsDefined.png
affylmGUI/inst/doc/LifeCycle/ContrastsName.png
affylmGUI/inst/doc/LifeCycle/DEgeneLabelOptions.png
affylmGUI/inst/doc/LifeCycle/DataSetName.png
affylmGUI/inst/doc/LifeCycle/ExportHTMLselected.png
affylmGUI/inst/doc/LifeCycle/HTMLcomponents.png
affylmGUI/inst/doc/LifeCycle/HTMLfilename.png
affylmGUI/inst/doc/LifeCycle/LifeCycle.html
affylmGUI/inst/doc/LifeCycle/MAcontrastPlot.png
affylmGUI/inst/doc/LifeCycle/MAcontrastPlotLabels.png
affylmGUI/inst/doc/LifeCycle/MAplotContrast.png
affylmGUI/inst/doc/LifeCycle/MalariaLifeCycle.html
affylmGUI/inst/doc/LifeCycle/MalariaLifeCycle_files
affylmGUI/inst/doc/LifeCycle/MalariaLifeCycle_files/NormalizedIntensityBoxPlot.png
affylmGUI/inst/doc/LifeCycle/MalariaLifeCycle_files/RawIntensityBoxPlot.png
affylmGUI/inst/doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.1.png
affylmGUI/inst/doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.2.png
affylmGUI/inst/doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.3.png
affylmGUI/inst/doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.4.png
affylmGUI/inst/doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.5.png
affylmGUI/inst/doc/LifeCycle/MalariaLifeCycle_files/contrastMAplot.6.png
affylmGUI/inst/doc/LifeCycle/NewSelected.png
affylmGUI/inst/doc/LifeCycle/NormalizeSelected.png
affylmGUI/inst/doc/LifeCycle/PNGparams.png
affylmGUI/inst/doc/LifeCycle/R2HTML.css
affylmGUI/inst/doc/LifeCycle/R2HTMLlogo.gif
affylmGUI/inst/doc/LifeCycle/R2HTMLlogo.png
affylmGUI/inst/doc/LifeCycle/RMAselected.png
affylmGUI/inst/doc/LifeCycle/TargetsFileSelected.png
affylmGUI/inst/doc/LifeCycle/ToptableMzvsLS.png
affylmGUI/inst/doc/LifeCycle/ToptableOptions.png
affylmGUI/inst/doc/LifeCycle/ToptableSelected.png
affylmGUI/inst/doc/LifeCycle/chooseDir.png
affylmGUI/inst/doc/LifeCycle/mainWin.png
affylmGUI/inst/doc/LifeCycle/malariaTargetsInExcel.png
affylmGUI/inst/doc/about.html
affylmGUI/inst/doc/about_files
affylmGUI/inst/doc/about_files/BioinfBanner.jpg
affylmGUI/inst/doc/about_files/HeatDiagram.png
affylmGUI/inst/doc/about_files/MAplotPres10vsAbs10.png
affylmGUI/inst/doc/about_files/MainWinAfterContrastsComputed.png
affylmGUI/inst/doc/about_files/Toptable.png
affylmGUI/inst/doc/about_files/wehilogo.gif
affylmGUI/inst/doc/affylmGUI.R
affylmGUI/inst/doc/affylmGUI.Rnw
affylmGUI/inst/doc/affylmGUI.pdf
affylmGUI/inst/doc/changelog.txt
affylmGUI/inst/doc/estrogen
affylmGUI/inst/doc/estrogen/AdvancedButtonShowsContrastsMatrix.png
affylmGUI/inst/doc/estrogen/ChooseContrast.png
affylmGUI/inst/doc/estrogen/ChooseContrast2.png
affylmGUI/inst/doc/estrogen/ChooseContrastsParameterization.png
affylmGUI/inst/doc/estrogen/ChooseNormalizationMethod.png
affylmGUI/inst/doc/estrogen/ChooseProbSetForDensity.png
affylmGUI/inst/doc/estrogen/ChooseSlide.png
affylmGUI/inst/doc/estrogen/ComputeContrastsSelected.png
affylmGUI/inst/doc/estrogen/ContrastNamesForHeatDiagram.png
affylmGUI/inst/doc/estrogen/ContrastsParameterizationName.png
affylmGUI/inst/doc/estrogen/DEGeneLabelOptions.png
affylmGUI/inst/doc/estrogen/DataSetName.png
affylmGUI/inst/doc/estrogen/DefiningContrasts.png
affylmGUI/inst/doc/estrogen/DensityPlot.png
affylmGUI/inst/doc/estrogen/DensityPlotSelected.png
affylmGUI/inst/doc/estrogen/ExportNormalizedExpressionValuesSelected.png
affylmGUI/inst/doc/estrogen/ExportingExpressionValues.png
affylmGUI/inst/doc/estrogen/ExprsInExcel.png
affylmGUI/inst/doc/estrogen/FilenameInTitlebar.png
affylmGUI/inst/doc/estrogen/HeatDiagram.png
affylmGUI/inst/doc/estrogen/HeatDiagramCutoffs.png
affylmGUI/inst/doc/estrogen/HeatDiagramSelected.png
affylmGUI/inst/doc/estrogen/ImageArrayPlotSelected.png
affylmGUI/inst/doc/estrogen/ImagePlotInR.png
affylmGUI/inst/doc/estrogen/ImageQualityPlotInR.png
affylmGUI/inst/doc/estrogen/ImageQualityPlotSelected.png
affylmGUI/inst/doc/estrogen/LinearModelFitSelected.png
affylmGUI/inst/doc/estrogen/LogOddsPlot.png
affylmGUI/inst/doc/estrogen/LogOddsSelected.png
affylmGUI/inst/doc/estrogen/MAPlotLabels.png
affylmGUI/inst/doc/estrogen/MAplotContrastSelected.png
affylmGUI/inst/doc/estrogen/MAplotPres10vsAbs10.png
affylmGUI/inst/doc/estrogen/MainWinAfterContrastsComputed.png
affylmGUI/inst/doc/estrogen/MainWinLinearModelFitComputed.png
affylmGUI/inst/doc/estrogen/MainWindowArraysLoaded.png
affylmGUI/inst/doc/estrogen/NormalizeSelected.png
affylmGUI/inst/doc/estrogen/NormalizedIntensityBoxPlot.png
affylmGUI/inst/doc/estrogen/NormalizedIntensityBoxPlotSelected.png
affylmGUI/inst/doc/estrogen/OpenTargetsFileDialog.png
affylmGUI/inst/doc/estrogen/OpeningEstrogenTargets.png
affylmGUI/inst/doc/estrogen/PlotLabelsForDensity.png
affylmGUI/inst/doc/estrogen/PlotTitleAndAxisLabels.png
affylmGUI/inst/doc/estrogen/RNATargets.png
affylmGUI/inst/doc/estrogen/RNATargetsSelected.png
affylmGUI/inst/doc/estrogen/RawIntensityBoxPlot.png
affylmGUI/inst/doc/estrogen/RawIntensityBoxPlotSelected.png
affylmGUI/inst/doc/estrogen/RawIntensityBoxPlotTitle.png
affylmGUI/inst/doc/estrogen/Rgui.png
affylmGUI/inst/doc/estrogen/RvsTkrplot.png
affylmGUI/inst/doc/estrogen/SaveAsSelected.png
affylmGUI/inst/doc/estrogen/SavingEstrogen.png
affylmGUI/inst/doc/estrogen/SelectingContrastsForVenn.png
affylmGUI/inst/doc/estrogen/SetNamesForVenn.png
affylmGUI/inst/doc/estrogen/TargetsFileSelected.png
affylmGUI/inst/doc/estrogen/Toptable.png
affylmGUI/inst/doc/estrogen/ToptableOptions.png
affylmGUI/inst/doc/estrogen/ToptableSelected.png
affylmGUI/inst/doc/estrogen/UpDownOrBothForVenn.png
affylmGUI/inst/doc/estrogen/VennDiagram.png
affylmGUI/inst/doc/estrogen/VennDiagramSelected.png
affylmGUI/inst/doc/estrogen/affylmGUImain.png
affylmGUI/inst/doc/estrogen/estrogen.html
affylmGUI/inst/doc/estrogen/estrogenDir.png
affylmGUI/inst/doc/estrogen/heatdiagramPlotTitle.png
affylmGUI/inst/doc/estrogen/mainWinAfterNormalization.png
affylmGUI/inst/doc/estrogen/qqtPlot.png
affylmGUI/inst/doc/estrogen/qqtSelected.png
affylmGUI/inst/doc/extract.Rnw
affylmGUI/inst/doc/extract.pdf
affylmGUI/inst/doc/index.html
affylmGUI/inst/doc/input
affylmGUI/inst/doc/input/EstrogenTargets.png
affylmGUI/inst/doc/input/InputFiles.html
affylmGUI/inst/doc/style.css
affylmGUI/inst/doc/windowsFocus.html
affylmGUI/inst/etc
affylmGUI/inst/etc/affylmGUI-menus.txt
affylmGUI/inst/etc/recent-files.txt
affylmGUI/man
affylmGUI/man/ALGchangeLog.Rd affylmGUI/man/affylmGUI.Rd
affylmGUI/vignettes
affylmGUI/vignettes/affylmGUI.Rnw
affylmGUI/vignettes/extract.Rnw

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