compartmap: A/B compartment inference from ATAC-seq and methylation array data

Compartmap performs shrunken A/B compartment inference from ATAC-seq and methylation arrays.

Package details

AuthorBenjamin Johnson [aut, cre], Tim Triche [aut], Kasper Hansen [aut], Jean-Philippe Fortin [aut]
Bioconductor views ATACSeq Epigenetics Genetics ImmunoOncology MethylSeq MethylationArray
MaintainerBenjamin Johnson <[email protected]>
LicenseGPL-3 + file LICENSE
Version1.2.0
URL https://github.com/biobenkj/compartmap
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("compartmap")

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compartmap documentation built on May 6, 2019, 2:09 a.m.