compartmap
A/B compartment inference from ATAC-seq and methylation array data

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compartmap: A/B compartment inference from ATAC-seq and methylation array data

compartmap: A/B compartment inference from ATAC-seq and methylation array data

Compartmap performs shrunken A/B compartment inference from ATAC-seq and methylation arrays.

Getting started

README.md A/B compartment inference from ATAC-seq and methylation arrays with compartmap

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Package details
AuthorBenjamin Johnson [aut, cre], Tim Triche [aut], Kasper Hansen [aut], Jean-Philippe Fortin [aut]
Bioconductor views ATACSeq Epigenetics Genetics ImmunoOncology MethylSeq MethylationArray
MaintainerBenjamin Johnson <ben.johnson@vai.org>
LicenseGPL-3 + file LICENSE
Version1.8.0
URL https://github.com/biobenkj/compartmap 
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R: 
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("compartmap")

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compartmap documentation built on Nov. 8, 2020, 5:34 p.m.

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