A/B compartment inference from ATAC-seq and methylation array data

array.data.chr14 | Example Illumina 450k methylation array data for compartmap |

filtered.data.chr14 | Example ATAC-seq data for compartmap |

fisherZ | Fisher's Z transformation |

getABSignal | Calculate Pearson correlations of smoothed eigenvectors |

getArrayABsignal | Estimate A/B compartments from methylation array data |

getATACABsignal | Estimate A/B compartments from ATAC-seq data |

getBinMatrix | Generate bins for A/B compartment estimation |

getCompartments | Estimate A/B compartments |

getCorMatrix | Calculate Pearson correlations of a binned matrix |

ifisherZ | Fisher's Z transformation |

plotAB | Plots A/B compartment estimates on a per chromosome basis |

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