sjczheng/EpiDISH: Epigenetic Dissection of Intra-Sample-Heterogeneity

EpiDISH is a R package to infer the proportions of a priori known cell-types present in a sample representing a mixture of such cell-types. Right now, the package can be used on DNAm data of whole blood, generic epithelial tissue and breast tissue. Besides, the package provides a function that allows the identification of differentially methylated cell-types and their directionality of change in Epigenome-Wide Association Studies.

Getting started

Package details

Bioconductor views DNAMethylation DifferentialMethylation Epigenetics ImmunoOncology MethylationArray
Maintainer
LicenseGPL-2
Version2.11.1
URL https://github.com/sjczheng/EpiDISH
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("sjczheng/EpiDISH")
sjczheng/EpiDISH documentation built on Feb. 7, 2022, 8:15 p.m.