centUniLIFE.m: DNAm reference matrix for 19 immune cell-types for blood of...

In sjczheng/EpiDISH: Epigenetic Dissection of Intra-Sample-Heterogeneity

DNAm reference matrix for 19 immune cell-types for blood of any age

Description

This reference is constructed using data from Salas et al.(2022) and several cord-blood DNAm datasets. It contains the following 19 immune cell subtypes. This reference can be used for EPIC and 450k arrays.

Usage

data(centUniLIFE.m)

Format

A matrix with 1906 CpGs (rows) and 19 immune cell-types (columns)

Details

• cord-blood granulocytes

• cord-blood monocytes

• cord-blood nRBCs

• cord-blood B-cells

• cord-blood NK-cells

• cord-blood CD8+ T-cells

• cord-blood CD4+ T-cells

• adult CD4+ naive T-cells

• adult Basophil cells

• adult CD4+ memory T-cells

• adult Memory B-cells

• adult Naive B-cells

• adult Regulatory T-Cells

• adult CD8+ memory T-cells

• adult CD8+ naive T-cells

• adult Eosinophils

• adult NK-cells

• adult Neutrophils

• adult Monocytes

References

Xiaolong Guo et al Universal high resolution cell-type deconvolution of blood tissue from any age. Submitted.

sjczheng/EpiDISH documentation built on Nov. 16, 2024, 11:54 a.m.