cent12CT450k.m: Whole blood reference of 12 blood cell subtypes for 450k...
In sjczheng/EpiDISH: Epigenetic Dissection of Intra-Sample-Heterogeneity
cent12CT450k.m R Documentation
Whole blood reference of 12 blood cell subtypes for 450k array
Description
This reference is constructed using data from Salas et al.(2022). It contains
the following 12 blood cell subtypes. This reference is constructed for 450k arrays.
See cent12CT.m for EPIC arrays.
Usage
data(cent12CT450k.m)
Format
A matrix with 600 rows and 12 columns
Details
CD4+ naive T-cells
Basophil cells
CD4+ memory T-cells
Memory B-cells
Naive B-cells
Regulatory T-Cells
CD8+ memory T-cells
CD8+ naive T-cells
Eosinophils
NK-cells
Neutrophils
Monocytes
References
Lucas A Salas, Ze Zhang, Devin C Koestler, Rondi A Butler, Helen M Hansen,
Annette M Molinaro, John K Wiencke, Karl T Kelsey, Brock C Christensen
Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling.
Nat Commun. (2022) 13: 761.
doi:
10.1038/s41467-021-27864-7.
sjczheng/EpiDISH documentation built on Nov. 13, 2022, 9:57 p.m.
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| cent12CT450k.m | R Documentation |
Whole blood reference of 12 blood cell subtypes for 450k array
Description
This reference is constructed using data from Salas et al.(2022). It contains
the following 12 blood cell subtypes. This reference is constructed for 450k arrays.
See cent12CT.m for EPIC arrays.
Usage
data(cent12CT450k.m)
Format
A matrix with 600 rows and 12 columns
Details
CD4+ naive T-cells
Basophil cells
CD4+ memory T-cells
Memory B-cells
Naive B-cells
Regulatory T-Cells
CD8+ memory T-cells
CD8+ naive T-cells
Eosinophils
NK-cells
Neutrophils
Monocytes
References
Lucas A Salas, Ze Zhang, Devin C Koestler, Rondi A Butler, Helen M Hansen, Annette M Molinaro, John K Wiencke, Karl T Kelsey, Brock C Christensen Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling. Nat Commun. (2022) 13: 761. doi: 10.1038/s41467-021-27864-7.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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