GEM: GEM: fast association study for the interplay of Gene, Environment and Methylation

Tools for analyzing EWAS, methQTL and GxE genome widely.

AuthorHong Pan, Joanna D Holbrook, Neerja Karnani, Chee-Keong Kwoh
Date of publicationNone
MaintainerHong Pan <pan_hong@sics.a-star.edu.sg>
LicenseArtistic-2.0
Version1.0.0

View on Bioconductor

Functions

as.matrix,SlicedData-method Man page
colMeans,SlicedData-method Man page
colnames<-,SlicedData-method Man page
colnames,SlicedData-method Man page
colSums,SlicedData-method Man page
dim,SlicedData-method Man page
GEM_Emodel Man page
GEM_Gmodel Man page
GEM_GUI Man page
GEM_GWASmodel Man page
GEM_GxEmodel Man page
GEM-package Man page
length,SlicedData-method Man page
ncol,SlicedData-method Man page
NCOL,SlicedData-method Man page
nrow,SlicedData-method Man page
NROW,SlicedData-method Man page
rowMeans,SlicedData-method Man page
rownames<-,SlicedData-method Man page
rownames,SlicedData-method Man page
rowSums,SlicedData-method Man page
show,SlicedData-method Man page
SlicedData Man page
SlicedData-class Man page
SlicedData-class Man page
[[<-,SlicedData-method Man page
[[,SlicedData-method Man page
summary.SlicedData Man page

Files

GEM/DESCRIPTION
GEM/NAMESPACE
GEM/R
GEM/R/GEM_GUI.R GEM/R/GEM_model.R GEM/R/Matrix_eQTL_engine2.R
GEM/README.md
GEM/build
GEM/build/vignette.rds
GEM/inst
GEM/inst/CITATION
GEM/inst/NEWS.Rd
GEM/inst/doc
GEM/inst/doc/user_guide.R
GEM/inst/doc/user_guide.Rmd
GEM/inst/doc/user_guide.html
GEM/inst/extdata
GEM/inst/extdata/cov.txt
GEM/inst/extdata/env.txt
GEM/inst/extdata/gxe.txt
GEM/inst/extdata/methylation.txt
GEM/inst/extdata/snp.txt
GEM/inst/unitTests
GEM/inst/unitTests/test_GEM.R
GEM/man
GEM/man/GEM-package.Rd GEM/man/GEM_Emodel.Rd GEM/man/GEM_GUI.Rd GEM/man/GEM_GWASmodel.Rd GEM/man/GEM_Gmodel.Rd GEM/man/GEM_GxEmodel.Rd GEM/man/SlicedData-class.Rd
GEM/tests
GEM/tests/runTests.R
GEM/vignettes
GEM/vignettes/GUI_1.png
GEM/vignettes/GUI_2.png
GEM/vignettes/user_guide.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.