GEM: GEM: fast association study for the interplay of Gene, Environment and Methylation

Tools for analyzing EWAS, methQTL and GxE genome widely.

Author
Hong Pan, Joanna D Holbrook, Neerja Karnani, Chee-Keong Kwoh
Date of publication
None
Maintainer
Hong Pan <pan_hong@sics.a-star.edu.sg>
License
Artistic-2.0
Version
1.0.0

View on Bioconductor

Man pages

GEM_Emodel
GEM_Emodel Analysis
GEM_Gmodel
GEM_Gmodel Analysis
GEM_GUI
Graphical User Interface (GUI) for GEM
GEM_GWASmodel
GEM_GWASmodel
GEM_GxEmodel
GEM_GxEmodel
GEM-package
GEM: Fast association study for the interplay of Gene,...
SlicedData-class
Class 'SlicedData' for storing large matrices

Files in this package

GEM/DESCRIPTION
GEM/NAMESPACE
GEM/R
GEM/R/GEM_GUI.R
GEM/R/GEM_model.R
GEM/R/Matrix_eQTL_engine2.R
GEM/README.md
GEM/build
GEM/build/vignette.rds
GEM/inst
GEM/inst/CITATION
GEM/inst/NEWS.Rd
GEM/inst/doc
GEM/inst/doc/user_guide.R
GEM/inst/doc/user_guide.Rmd
GEM/inst/doc/user_guide.html
GEM/inst/extdata
GEM/inst/extdata/cov.txt
GEM/inst/extdata/env.txt
GEM/inst/extdata/gxe.txt
GEM/inst/extdata/methylation.txt
GEM/inst/extdata/snp.txt
GEM/inst/unitTests
GEM/inst/unitTests/test_GEM.R
GEM/man
GEM/man/GEM-package.Rd
GEM/man/GEM_Emodel.Rd
GEM/man/GEM_GUI.Rd
GEM/man/GEM_GWASmodel.Rd
GEM/man/GEM_Gmodel.Rd
GEM/man/GEM_GxEmodel.Rd
GEM/man/SlicedData-class.Rd
GEM/tests
GEM/tests/runTests.R
GEM/vignettes
GEM/vignettes/GUI_1.png
GEM/vignettes/GUI_2.png
GEM/vignettes/user_guide.Rmd