GEM_GUI: Graphical User Interface (GUI) for GEM

In GEM: GEM: fast association study for the interplay of Gene, Environment and Methylation

Description

The user friendly GUI for runing GEM package easily and quickly

Usage

GEM_GUI()

Details

The GEM package provides a highly efficient R tool suite for performing epigenome wide association studies (EWAS). GEM provides three major functions named GEM_Emodel, GEM_Gmodel and GEM_GxEmodel to study the interplay of Gene, Environment and Methylation (GEM). Within GEM, the pre-existing "Matrix eQTL" package is utilized and extended to study methylation quantitative trait loci (methQTL) and the interaction of genotype and environment (GxE) to determine DNA methylation variation, using matrix based iterative correlation and memory-efficient data analysis. GEM can facilitate reliable genome-wide methQTL and GxE analysis on a standard laptop computer within minutes.

Value

GEM model analysis results

See Also

GEM-package

Examples

interactive()
#GEM_GUI()  ## remove the hash symbol to run

Example output

Warning message:
no DISPLAY variable so Tk is not available 
[1] FALSE

GEM documentation built on Nov. 8, 2020, 5:02 p.m.