samarafk/MLML2R: Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions
Version 0.2.1

Maximum likelihood estimates (MLE) of the proportions of 5-mC and 5-hmC in the DNA using information from BS-conversion, TAB-conversion, and oxBS-conversion methods. One can use information from all three methods or any combination of two of them. Estimates are based on Binomial model by Qu et al. (2013) and Kiihl et al. (2018, to appear).

Getting started

Package details

AuthorSamara Kiihl [aut, cre], Maria Jose Martinez-Garrido [aut], Arce Domingo-Relloso [aut], Jose Bermudez [aut], Maria Tellez-Plaza [aut]
Bioconductor views DNAMethylation Epigenetics MethylationArray Microarray OneChannel Software TwoChannel
MaintainerSamara Kiihl <[email protected]>
LicenseMIT + file LICENSE
Version0.2.1
URL https://github.com/samarafk/MLML2R
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("samarafk/MLML2R")
samarafk/MLML2R documentation built on July 3, 2018, 1:47 a.m.