JoshuaTian/ChAMP: Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC

The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number alterations.

Getting started

Package details

AuthorYuan Tian [cre,aut], Tiffany Morris [ctb], Lee Stirling [ctb], Andrew Feber [ctb], Andrew Teschendorff [ctb], Ankur Chakravarthy [ctb]
Bioconductor views CopyNumber DNAMethylation MethylationArray Microarray Normalization TwoChannel
MaintainerYuan Tian <champ450k@gmail.com>
LicenseGPL-3
Version2.23.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("JoshuaTian/ChAMP")
JoshuaTian/ChAMP documentation built on April 3, 2022, 10:02 a.m.