JoshuaTian/ChAMP: Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Version 2.9.11

The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number alterations.

Getting started

Package details

AuthorYuan Tian [cre,aut], Tiffany Morris [ctb], Lee Stirling [ctb], Andrew Feber [ctb], Andrew Teschendorff [ctb], Ankur Chakravarthy [ctb]
Bioconductor views CopyNumber DNAMethylation MethylationArray Microarray Normalization TwoChannel
MaintainerYuan Tian <[email protected]>
LicenseGPL-3
Version2.9.11
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("JoshuaTian/ChAMP")
JoshuaTian/ChAMP documentation built on Jan. 9, 2018, 1:47 a.m.