MBAmethyl: Model-based analysis of DNA methylation data

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This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.

Author
Tao Wang, Mengjie Chen
Date of publication
None
Maintainer
Tao Wang <tao.wang.tw376@yale.edu>
License
Artistic-2.0
Version
1.8.0

View on Bioconductor

Man pages

MBAmethyl
Model-based analysis of DNA methylation data
MBAmethyl-package
Model-based analysis of DNA methylation data

Files in this package

MBAmethyl/DESCRIPTION
MBAmethyl/NAMESPACE
MBAmethyl/R
MBAmethyl/R/MBAmethyl-internal.R
MBAmethyl/R/MBAmethyl.R
MBAmethyl/build
MBAmethyl/build/vignette.rds
MBAmethyl/inst
MBAmethyl/inst/CITATION
MBAmethyl/inst/NEWS.Rd
MBAmethyl/inst/doc
MBAmethyl/inst/doc/MBAmethyl.R
MBAmethyl/inst/doc/MBAmethyl.Rnw
MBAmethyl/inst/doc/MBAmethyl.pdf
MBAmethyl/man
MBAmethyl/man/MBAmethyl-package.Rd
MBAmethyl/man/MBAmethyl.Rd
MBAmethyl/vignettes
MBAmethyl/vignettes/MBAmethyl.Rnw