MBAmethyl: Model-based analysis of DNA methylation data
Version 1.10.0

This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.

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AuthorTao Wang, Mengjie Chen
Bioconductor views DNAMethylation MethylationArray
Date of publicationNone
MaintainerTao Wang <tao.wang.tw376@yale.edu>
LicenseArtistic-2.0
Version1.10.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("MBAmethyl")

Man pages

MBAmethyl: Model-based analysis of DNA methylation data
MBAmethyl-package: Model-based analysis of DNA methylation data

Functions

MBAmethyl Man page Source code
MBAmethyl-package Man page
defaultWeights Source code
doGFLars Source code
leftMultiplyByInvXAtXA Source code
leftMultiplyByXt Source code
multiplyXtXBySparse Source code

Files

DESCRIPTION
NAMESPACE
R
R/MBAmethyl-internal.R
R/MBAmethyl.R
build
build/vignette.rds
inst
inst/CITATION
inst/NEWS.Rd
inst/doc
inst/doc/MBAmethyl.R
inst/doc/MBAmethyl.Rnw
inst/doc/MBAmethyl.pdf
man
man/MBAmethyl-package.Rd
man/MBAmethyl.Rd
vignettes
vignettes/MBAmethyl.Rnw
MBAmethyl documentation built on May 20, 2017, 10:33 p.m.