bigmelon: Illumina methylation array analysis for large experiments

Methods for working with Illumina arrays using gdsfmt.

AuthorTyler Gorrie-Stone, Ayden Saffari, Karim Malki, Leonard C Schalkwyk
Date of publicationNone
MaintainerTyler Gorrie-Stone <tgorri@essex.ac.uk>
LicenseGPL-3
Version1.0.0

View on Bioconductor

Functions

app2gds Man page
backup.gdsn Man page
betaqn,gds.class-method Man page
betas,gds.class-method Man page
bigmelon Man page
bigmelon-accessors Man page
bigmelon-internal Man page
bigmelon-package Man page
bmrownames Man page
bmrownames,gds.class-method Man page
cantaloupe Man page
colnames,gds.class-method Man page
colnames,gdsn.class-method Man page
combo.gds Man page
danen.gds Man page
danen,gds.class-method Man page
danes.gds Man page
danes,gds.class-method Man page
danet.gds Man page
danet,gds.class-method Man page
dasen2 Man page
dasen.gds Man page
dasen,gds.class-method Man page
daten1.gds Man page
daten1,gds.class-method Man page
daten2.gds Man page
daten2,gds.class-method Man page
db.gdsn Man page
design.qn.gdsn Man page
dfsfit.gdsn Man page
dfsfit.gdsn.class.1 Man page
dmrse_col,gds.class-method Man page
dmrse_col,gdsn.class-method Man page
dmrse,gds.class-method Man page
dmrse,gdsn.class-method Man page
dmrse_row,gds.class-method Man page
dmrse_row,gdsn.class-method Man page
es2gds Man page
exprs,gds.class-method Man page
fData,gds.class-method Man page
finalreport2gds Man page
findgdsobj Man page
gds2mlumi Man page
gds2mset Man page
'[.gds.class' Man page
[.gds.class Man page
'[.gdsn.class' Man page
[.gdsn.class Man page
genki,gds.class-method Man page
genki,gdsn.class-method Man page
getHistory,gds.class-method Man page
getTrait Man page
handle Man page
honeydew Man page
iadd Man page
iadd2 Man page
methylated,gds.class-method Man page
nanes.gds Man page
nanes,gds.class-method Man page
nanet.gds Man page
nanet,gds.class-method Man page
nasen.gds Man page
nasen,gds.class-method Man page
naten.gds Man page
naten,gds.class-method Man page
newgds Man page
normalizeQuantiles.gdsn.class Man page
pData,gds.class-method Man page
pfilter.gds Man page
pfilter,gds.class Man page
pfilter,gds.class-method Man page
prcomp.gdsn Man page
prcomp, gdsn.class Man page
prcomp.gdsn.class Man page
prcomp, gdsn.class-method Man page
pvals,gds.class-method Man page
pwod, gds.class Man page
pwod.gdsn Man page
pwod, gdsn.class Man page
QCmethylated Man page
QCmethylated,gds.class-method Man page
QCrownames Man page
QCrownames,gds.class-method Man page
QCunmethylated Man page
QCunmethylated,gds.class-method Man page
qn.gdsn Man page
qual,gdsn.class,gdsn.class-method Man page
redirect.gds Man page
rownames,gds.class-method Man page
rownames,gdsn.class-method Man page
seabi,gds.class-method Man page
subSet Man page
subSet,gds.class-method Man page
unmethylated,gds.class-method Man page
wm-port Man page
zot Man page

Files

bigmelon/DESCRIPTION
bigmelon/NAMESPACE
bigmelon/NEWS
bigmelon/R
bigmelon/R/comboGds.R bigmelon/R/dasenGds.R bigmelon/R/dbGdsn.R bigmelon/R/dfsfitGdsn.R bigmelon/R/es2gds.R bigmelon/R/gds2mlumi.R bigmelon/R/gdsnclass_methods.R bigmelon/R/inout.R bigmelon/R/pfilterGds.R bigmelon/R/prcompGdsn.R bigmelon/R/pwodGdsn.R bigmelon/R/qnGdsn.R bigmelon/R/zzz.R
bigmelon/README.md
bigmelon/build
bigmelon/build/vignette.rds
bigmelon/data
bigmelon/data/cantaloupe.rda
bigmelon/data/honeydew.rda
bigmelon/inst
bigmelon/inst/doc
bigmelon/inst/doc/bigmelon.R
bigmelon/inst/doc/bigmelon.Rnw
bigmelon/inst/doc/bigmelon.pdf
bigmelon/inst/unitTests
bigmelon/inst/unitTests/test_internal.R
bigmelon/inst/unitTests/test_user.R
bigmelon/man
bigmelon/man/app2gds.Rd bigmelon/man/backupGdsn.Rd bigmelon/man/bigmelon-accessors.Rd bigmelon/man/bigmelon-internal.Rd bigmelon/man/bigmelon-normalization.Rd bigmelon/man/bigmelon-package.Rd bigmelon/man/cantaloupe.Rd bigmelon/man/combogds.Rd bigmelon/man/es2gds.Rd bigmelon/man/finalreport2gds.Rd bigmelon/man/gds2mlumi.Rd bigmelon/man/iadd.Rd bigmelon/man/pfiltergds.Rd bigmelon/man/prcompgdsn.Rd bigmelon/man/pwodgdsn.Rd bigmelon/man/redirect.Rd bigmelon/man/wm-port.Rd
bigmelon/tests
bigmelon/tests/runTests.R
bigmelon/vignettes
bigmelon/vignettes/bigmelon.Rnw
bigmelon/vignettes/logmemuse.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.