Append a MethyLumiSet object to a CoreArray Genomic Data Structure (GDS) data file

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Description

This function will append a MethyLumiSet data object to a CoreArray Genomic Data Structure(GDS) data file, and return as a gds.class object.

Usage

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app2gds(m, bmln)

Arguments

m

The MethyLumiSet object to be appended to the CoreArray Genomic Data Structure (GDS) data file

bmln

Either: A gds.class object

Or: A character string specifying the name of an existing .gds file to write to.

Or: A character string specifying the name of a new .gds file to write to

Value

A gds.class object, which points to the appended .gds file.

Author(s)

Leonard C Schalkwyk, Ayden Saffari, Tyler Gorrie-Stone Who to contact: <tgorri@essex.ac.uk>

See Also

es2gds, iadd.

Examples

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#load example dataset
data(melon)

#split data into halves
melon_1 <- melon[,1:6]
melon_2 <- melon[,7:12]

#convert first half to gds
e <- es2gds(melon_1,'1_half_melon.gds')

#append second half to existing gds file
f <- app2gds(melon_2,e)

closefn.gds(e)
unlink("1_half_melon.gds")