es2gds: Coersion method for MethyLumiSet, RGChannelSet or MethylSet...

Description Usage Arguments Value Author(s) See Also Examples

View source: R/es2gds.R

Description

The es2gds function takes a MethyLumiSet, RGChannelSet or MethylSet data object and converts it into a CoreArray Genomic Data Structure (GDS) data file (via the gdsfmt package), returning this as a gds.class object for use with bigmelon.

Usage

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es2gds(m, file, qc = TRUE)

Arguments

m

A MethyLumiSet, RGChannelSet or MethylSet object

file

A character string specifying the name of the .gds file to write to.

qc

When set to true (default), data from control probes included.

Value

A gds.class object, which points to the newly created .gds file.

Author(s)

Leonard C Schalkwyk, Ayden Saffari, Tyler Gorrie-Stone Who to contact: <[email protected]>

See Also

app2gds, iadd.

Examples

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#load example dataset
data(melon)
#convert to gds
e <- es2gds(melon,'melon.gds')
closefn.gds(e)
unlink('melon.gds')

bigmelon documentation built on May 2, 2018, 3:18 a.m.