gds2mlumi: Convert Genomic Data Structure file to Methylumiset or...

In bigmelon: Illumina methylation array analysis for large experiments

Description

Convert a Genomic Data Structure object back into a methylumi object, with subsetting features.

Usage

gds2mlumi(gds, i, j)
gds2mset(gds, i, j, anno)

Arguments

gds	a gds object
i	Index of rows
j	Index of Columns
anno	If NULL, function will attempt to guess the annotation to be used. Otherwise can be specified with either "27k", "450k", "epic" or "unknown".

Value

A methylumi object

Author(s)

Tyler Gorrie-Stone Who to contact: <[e-mail]>

Examples

data(melon)
e <- es2gds(melon, "melon.gds")
gds2mlumi(e)
closefn.gds(e)
unlink("melon.gds")

bigmelon documentation built on Nov. 8, 2020, 7:40 p.m.