wm-port: Functions imported from wateRmelon

Description Usage Arguments Details Value See Also

Description

Manual page for methods for the extraenous functions from wateRmelon. For more details for specific functions see the respective manual pages in wateRmelon.

Usage

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## S4 method for signature 'gdsn.class,gdsn.class'
qual(norm, raw)
## S4 method for signature 'gds.class'
predictSex(x, x.probes=NULL, pc=2, plot=TRUE, irlba=TRUE, center=FALSE, scale.=FALSE)
## S4 method for signature 'gdsn.class'
predictSex(x, x.probes=NULL, pc=2, plot=TRUE, irlba=TRUE, center=FALSE, scale.=FALSE)

Arguments

norm

normalized node (gdsn.class)

raw

raw node (gdsn.class)

x

gdsclass object or node corresponding to betas

x.probes

Default is NULL, is required to be supplied in bigmelon. logical or numeric vector containing indicies of X chromosome probes

pc

The principal component to guess sex across (usually the 2nd one in most cases)

plot

Logical, indicated whether or not to plot the prediction

irlba

Logical, indicate whether or not to use the faster method to generate principal components

center

Logical, indicate whether or not to center data around 0

scale.

Logical, indicate whether or not to scale data prior to prcomp

Details

For the full usage and description of any functions that link to this manual page, please visit the respective manual pages from wateRmelon.

Value

Returns expected output of functions from wateRmelon

See Also

wateRmelon


bigmelon documentation built on Nov. 8, 2020, 7:40 p.m.