huerqiang/GeoTcgaData: Processing Various Types of Data on GEO and TCGA
Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA) provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP and Copy number variation data. It's easy to download data from TCGA using the gdc tool, but processing these data into a format suitable for bioinformatics analysis requires more work. This R package was developed to handle these data.
Getting started
Browse package contents
Package details |
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| Bioconductor views | ATACSeq CopyNumberVariation DNAMethylation DifferentialExpression DifferentialMethylation GeneExpression MethylationArray Microarray RNASeq SNP Software |
| Maintainer | |
| License | Artistic-2.0 |
| Version | 2.3.1 |
| URL | https://github.com/YuLab-SMU/GeoTcgaData |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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