prepare_chi: Preparer file for chi-square test
In huerqiang/GeoTcgaData: Processing Various Types of Data on GEO and TCGA

prepare_chi

R Documentation

Preparer file for chi-square test

Description

Preparer file for chi-square test

Usage

prepare_chi(cnv)

Arguments

cnv

result of ann_merge()

Value

a matrix

Examples

cnv <- matrix(c(
    -1.09150, -1.47120, -0.87050, -0.50880,
    -0.50880, 2.0, 2.0, 2.0, 2.0, 2.0, 2.601962, 2.621332, 2.621332,
    2.621332, 2.621332, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0,
    2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0
), nrow = 5)
cnv <- as.data.frame(cnv)
rownames(cnv) <- c("AJAP1", "FHAD1", "CLCNKB", "CROCCP2", "AL137798.3")
colnames(cnv) <- c(
    "TCGA-DD-A4NS-10A-01D-A30U-01", "TCGA-ED-A82E-01A-11D-A34Y-01",
    "TCGA-WQ-A9G7-01A-11D-A36W-01", "TCGA-DD-AADN-01A-11D-A40Q-01",
    "TCGA-ZS-A9CD-10A-01D-A36Z-01", "TCGA-DD-A1EB-11A-11D-A12Y-01"
)
cnv_chi_file <- prepare_chi(cnv)

huerqiang/GeoTcgaData documentation built on March 21, 2024, 1:42 a.m.