Merge_methy_tcga: Merge methylation data downloaded from TCGA

In huerqiang/GeoTcgaData: Processing Various Types of Data on GEO and TCGA

Merge methylation data downloaded from TCGA

Description

When the methylation data is downloaded from TCGA, each sample is saved in a folder, which contains the methylation value file and the descriptive file. This function can directly extract and consolidate all folders.

Usage

Merge_methy_tcga(dirr = NULL)

Arguments

dirr	a string for the directory of methylation data download from tcga useing the tools gdc

Value

a matrix, a combined methylation expression spectrum matrix

Examples

merge_result <- Merge_methy_tcga(system.file(file.path("extdata", "methy"),
    package = "GeoTcgaData"))

huerqiang/GeoTcgaData documentation built on March 21, 2024, 1:42 a.m.