Files in huerqiang/GeoTcgaData

Processing Various Types of Data on GEO and TCGA

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/CNV.R R/Merge_methylation.R R/RNA_seq.R R/SNP.R R/TCGA_id_conversion.R R/arrayDiff.R R/calculate_mean_module.R R/calculate_mean_profile.R R/data.R R/fpkm_count_conversion.r R/metap.R R/prepareChi.r R/rep.R

R/sysdata.rda

README.Rmd README.md

data/GSE66705_sample2.rda

data/geneExpress.rda

data/gene_cov.rda

data/kegg_liver.rda

data/module.rda

data/profile.rda

data/ventricle.rda

docs/news/index.html

docs/reference/arrayDiff.html

docs/reference/index.html

docs/sitemap.xml

inst/extdata/build_data.R

inst/extdata/cnv/00de3/HONGS_p_TCGAb3_75_76_77_NSP_G.txt

inst/extdata/cnv/00e8/MICHE_p_TCGAb_428_429_NS.txt

inst/extdata/cnv/00f9/MINAE_p_TCGA_200_202_203_S.txt

inst/extdata/cnv/0a01/KNELT_p_TCGA_b123_131_S.txt

inst/extdata/methy/0a0b4/jhu-usc.e.H.4.lvl-3.TCGA-13-1405-01A-01D-0460-05.g.txt

inst/extdata/methy/0a0b4/logs/file1.parcel

inst/extdata/methy/0a6b/jhu-usc.e.H.10.lvl-3.TCGA-30-1880-01A-01D-0652-05.g.txt

inst/extdata/methy/0a6b/logs/file2.parcel

inst/extdata/methy/0ae7/jhu-usc.H.8.l.I.TCGA-30-1714-01A-02D-0563-05.g.txt

inst/extdata/methy/0ae7/logs/file3.parcel

inst/extdata/methy/0b32/jhu-usc.e.H.5.l.TCGA-13-1510-01A-02D-0475-05.gdc_hg38.txt

inst/extdata/methy/0b32/logs/file4.parcel

inst/extdata/tcga_cli/at.orl.TCGA-2V-A95S.xml

inst/extdata/tcga_cli/ati.org.TCGA-2Y-A9GT.xml

inst/extdata/tcga_cli/ats.org.TCGA-2Y-A9GS.xml

man/GSE66705_sample2.Rd man/Merge_methy_tcga.Rd man/SNP_QC.Rd man/array_preprocess.Rd man/cal_mean_module.Rd man/cluster_array.Rd man/combine_pvalue.Rd man/countToFpkm.Rd man/countToTpm.Rd man/differential_RNA.Rd man/differential_SNP.Rd man/differential_SNP_GEO.Rd man/differential_SNP_tcga.Rd man/differential_array.Rd man/differential_cnv.Rd man/differential_limma.Rd man/differential_methy.Rd man/fpkmToTpm.Rd man/geneExpress.Rd man/gene_ave.Rd man/gene_cov.Rd man/get_geo_array.Rd man/id_conversion_TCGA.Rd man/kegg_liver.Rd man/module.Rd man/prepare_chi.Rd man/profile.Rd man/repAssign.Rd man/repRemove.Rd man/ventricle.Rd tests/testthat.R tests/testthat/fpkmToTpm.R tests/testthat/test_Merge_methy_tcga.R tests/testthat/test_arrayDiff.R tests/testthat/test_cal_mean_module.R tests/testthat/test_countToFpkm.R tests/testthat/test_countToTpm.R tests/testthat/test_diff_RNA_ucsc.R tests/testthat/test_differential_CNV.R tests/testthat/test_differential_RNA.R tests/testthat/test_differential_limma.R tests/testthat/test_gene_ave.R tests/testthat/test_prepare_chi.R tests/testthat/test_repAssign.R tests/testthat/test_repRemove.R

vignettes/.gitignore

vignettes/GeoTcgaData.Rmd

huerqiang/GeoTcgaData documentation built on March 21, 2024, 1:42 a.m.