gene_ave: Average the values of same genes in gene expression profile

In huerqiang/GeoTcgaData: Processing Various Types of Data on GEO and TCGA

Average the values of same genes in gene expression profile

Description

Average the values of same genes in gene expression profile

Usage

gene_ave(file_gene_ave, k = 1)

Arguments

file_gene_ave	a data.frame of gene expression data, each column is a sample, and each row is a gene.
k	a number, indicates which is the gene column.

Value

a data.frame, the values of same genes in gene expression profile

Examples

aa <- c("MARCH1", "MARC1", "MARCH1", "MARCH1", "MARCH1")
bb <- c(2.969058399, 4.722410064, 8.165514853, 8.24243893, 8.60815086)
cc <- c(3.969058399, 5.722410064, 7.165514853, 6.24243893, 7.60815086)
file_gene_ave <- data.frame(aa = aa, bb = bb, cc = cc)
colnames(file_gene_ave) <- c("Gene", "GSM1629982", "GSM1629983")

result <- gene_ave(file_gene_ave, 1)

huerqiang/GeoTcgaData documentation built on March 21, 2024, 1:42 a.m.