repAssign: Handle the case where one id corresponds to multiple genes

In huerqiang/GeoTcgaData: Processing Various Types of Data on GEO and TCGA

Handle the case where one id corresponds to multiple genes

Description

Handle the case where one id corresponds to multiple genes

Usage

repAssign(input_file, string)

Arguments

input_file	input file, a data.frame or a matrix, the first column should be genes.
string	a string, sep of the gene

Value

a data.frame, when an id corresponds to multiple genes, the expression value is assigned to each gene

Examples

aa <- c("MARCH1 /// MMA", "MARC1", "MARCH2 /// MARCH3", 
    "MARCH3 /// MARCH4", "MARCH1")
bb <- c("2.969058399", "4.722410064", "8.165514853",
    "8.24243893", "8.60815086")
cc <- c("3.969058399", "5.722410064", "7.165514853", 
    "6.24243893", "7.60815086")
input_file <- data.frame(aa = aa, bb = bb, cc = cc)

repAssign_result <- repAssign(input_file, " /// ")

huerqiang/GeoTcgaData documentation built on March 21, 2024, 1:42 a.m.