DMRcate: Methylation array and sequencing spatial analysis methods

De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.

Package details

AuthorTim Peters
Bioconductor views Coverage DNAMethylation DataImport DifferentialExpression DifferentialMethylation Epigenetics GeneExpression Genetics GenomeAnnotation MethylationArray Microarray MultipleComparison OneChannel Preprocessing QualityControl Sequencing TimeCourse TwoChannel WholeGenome
MaintainerTim Peters <>
Licensefile LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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DMRcate documentation built on Jan. 17, 2021, 2 a.m.