DMRcate: Methylation array and sequencing spatial analysis methods

De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.

Package overview The DMRcate package user's guide

Vignettes Man pages API and functions Files

Package details
Author	Tim Peters
Bioconductor views	Coverage DNAMethylation DataImport DifferentialExpression DifferentialMethylation Epigenetics GeneExpression Genetics GenomeAnnotation MethylationArray Microarray MultipleComparison OneChannel Preprocessing QualityControl Sequencing TimeCourse TwoChannel WholeGenome
Maintainer	Tim Peters <t.peters@garvan.org.au>
License	file LICENSE
Version	2.4.1
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DMRcate")`