De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulphite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.
|Date of publication||None|
|Maintainer||Tim Peters <firstname.lastname@example.org>|
cpg.annotate: Annotate CpGs with their chromosome position and test...
dmrcate: DMR identification
DMRcate-internal: Internal DMRcate objects and functions
DMRcate-package: DMR calling from bisulphite sequencing and Illumina array...
DMR.plot: Plotting DMRs
extractRanges: Create GRanges object from 'dmrcate' output.
rmSNPandCH: Filter probes