LieberInstitute/brainstorm: Validating Sample Identiy Through RNA-seq and DNA Genotyping Correlation

Perform quality control analysis to validate the identity of samples between multiple DNA or RNA samples, and between DNA and RNA. Preprocess VCF files into integer SNP arrays. Correlate SNPs, and form groups of suspected related samples. This is useful to identify and resolve mislabled or "swapped" samples in the dataset.

Getting started

Package details

Bioconductor views GenotypingArray Preprocessing QualityControl RNAseq SNP Software
Maintainer
LicenseArtistic-2.0
Version0.99.0
URL https://github.com/LieberInstitute/brainstorm
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("LieberInstitute/brainstorm")
LieberInstitute/brainstorm documentation built on Dec. 17, 2021, 12:03 a.m.