make_snpsRNA: make_snpsRNA
In LieberInstitute/brainstorm: Validating Sample Identiy Through RNA-seq and DNA Genotyping Correlation
Description
Usage
Arguments
Value
Examples
Description
Prep rna snps and create DNA & RNA snps (snpsGeno2) and RNA snps (snpsCalled)
Usage
1
make_snpsRNA(genotyped, called)
Arguments
genotyped
CollapsedVCF containing snp info for genotype data
called
CollapsedVCF containing filtered snp info for rna data (generated by filtered_called)
Value
Named list containing snpsGeno2 and snpsCalled, both representing snp
arrays as integers.
Examples
1
2
3
4
snpsCalled_filter <- filter_called(snpsCalled_VCF)
snpsRNA <- make_snpsRNA(snpsGeno_VCF, snpsCalled_filter)
snpsRNA$snpsGeno2[1:5, 1:5]
snpsRNA$snpsCalled[1:5, 1:5]
LieberInstitute/brainstorm documentation built on Dec. 17, 2021, 12:03 a.m.
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Description Usage Arguments Value Examples
Description
Prep rna snps and create DNA & RNA snps (snpsGeno2) and RNA snps (snpsCalled)
Usage
1 | make_snpsRNA(genotyped, called)
|
Arguments
genotyped |
CollapsedVCF containing snp info for genotype data |
called |
CollapsedVCF containing filtered snp info for rna data (generated by filtered_called) |
Value
Named list containing snpsGeno2 and snpsCalled, both representing snp arrays as integers.
Examples
1 2 3 4 | snpsCalled_filter <- filter_called(snpsCalled_VCF)
snpsRNA <- make_snpsRNA(snpsGeno_VCF, snpsCalled_filter)
snpsRNA$snpsGeno2[1:5, 1:5]
snpsRNA$snpsCalled[1:5, 1:5]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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