Spaniel includes a series of tools to aid the quality control and analysis of Spatial Transcriptomics data. The package contains functions to create either a Seurat object or SingleCellExperiment from a count matrix and spatial barcode file and provides a method of loading a histologial image into R. The spanielPlot function allows visualisation of metrics contained within the S4 object overlaid onto the image of the tissue.
|Author||Rachel Queen <firstname.lastname@example.org>|
|Bioconductor views||Clustering Coverage DataImport DataRepresentation GeneExpression Infrastructure Normalization Preprocessing QualityControl RNASeq Sequencing SingleCell Software Transcriptomics Visualization|
|Maintainer||Rachel Queen <email@example.com>|
|License||MIT + file LICENSE|
|Package repository||View on Bioconductor|
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