A function to select spots to remove from analysis
Either a Seurat object (version 3) or a SingleCellExperiment object containing barcode coordinates in the metadata (Seurat) or colData (SingleCellExperiment).
a ggplot grob (see parseImage function)
Runs a shiny application
1 2 3 4 5 6 7 8 9
## Run the shiny app (Not run): # selectSpots(sObj, imgObj) # Click on the spots to remove from downstream analysis. Once all the spots # have been selected close the shiny app window. A list of spots is # stored in a text file called points_to_remove.txt in the working directory. # Once this step has been run a filtered Seurat or SCE object can be # created using removeSpots (see removeSpots for more details)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.