SAGx: Statistical Analysis of the GeneChip

A package for retrieval, preparation and analysis of data from the Affymetrix GeneChip. In particular the issue of identifying differentially expressed genes is addressed.

Author
Per Broberg
Date of publication
None
Maintainer
Per Broberg, <pi.broberg@gmail.com>
License
GPL-3
Version
1.48.0
URLs

View on Bioconductor

Files in this package

SAGx/ChangeLog
SAGx/DESCRIPTION
SAGx/NAMESPACE
SAGx/R
SAGx/R/Fstat.r
SAGx/R/GSEA.mean.t.R
SAGx/R/JT.test.r
SAGx/R/R2BASE.R
SAGx/R/R2mim.r
SAGx/R/Xprep.r
SAGx/R/Xprep.resid.R
SAGx/R/clin2mim.r
SAGx/R/cluster.q.r
SAGx/R/estimatep0.r
SAGx/R/fetchSignal.r
SAGx/R/firstpass.r
SAGx/R/fom.r
SAGx/R/fp.fn.r
SAGx/R/gap.r
SAGx/R/internal.R
SAGx/R/list.experiments.r
SAGx/R/list.intersection.p.r
SAGx/R/mat2TeX.r
SAGx/R/myclus.r
SAGx/R/normalise.r
SAGx/R/one.probeset.per.gene.R
SAGx/R/outlier.r
SAGx/R/p0.mom.r
SAGx/R/pava.fdr.r
SAGx/R/pava.r
SAGx/R/rank.genes.R
SAGx/R/rank.trend.r
SAGx/R/rsd.test.r
SAGx/R/samrocN.r
SAGx/R/samrocNboot.r
SAGx/R/samrocresult.R
SAGx/R/union.of.pways.R
SAGx/build
SAGx/build/vignette.rds
SAGx/inst
SAGx/inst/doc
SAGx/inst/doc/samroc-ex.R
SAGx/inst/doc/samroc-ex.Rnw
SAGx/inst/doc/samroc-ex.pdf
SAGx/man
SAGx/man/Fstat.rd
SAGx/man/GSEA.mean.t.rd
SAGx/man/JT.test.rd
SAGx/man/R2BASE.rd
SAGx/man/R2mim.rd
SAGx/man/Xprep.rd
SAGx/man/Xprep.resid.rd
SAGx/man/clin2mim.rd
SAGx/man/cluster.q.rd
SAGx/man/estimatep0.rd
SAGx/man/fetchSignal.rd
SAGx/man/firstpass.rd
SAGx/man/fom.rd
SAGx/man/fp.fn.rd
SAGx/man/gap.rd
SAGx/man/list.experiments.rd
SAGx/man/list.intersection.p.rd
SAGx/man/mat2TeX.rd
SAGx/man/myclus.rd
SAGx/man/normalise.rd
SAGx/man/one.probeset.per.gene.rd
SAGx/man/outlier.rd
SAGx/man/p0.mom.rd
SAGx/man/pava.fdr.rd
SAGx/man/pava.rd
SAGx/man/rank.genes.rd
SAGx/man/rank.trend.rd
SAGx/man/rsd.test.rd
SAGx/man/samroc.result-class.rd
SAGx/man/samrocn.rd
SAGx/man/samrocnboot.rd
SAGx/man/union.of.pways.rd
SAGx/src
SAGx/src/minigsea.c
SAGx/src/newboot.c
SAGx/src/samrocNboot.c
SAGx/test
SAGx/vignettes
SAGx/vignettes/samroc-ex.Rnw
SAGx/vignettes/samroc-ex.bib