SAGx: Statistical Analysis of the GeneChip

A package for retrieval, preparation and analysis of data from the Affymetrix GeneChip. In particular the issue of identifying differentially expressed genes is addressed.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SAGx")
AuthorPer Broberg
Bioconductor views Clustering DataImport DifferentialExpression GeneExpression GeneSetEnrichment KEGG Microarray MultipleComparison OneChannel Pathways Preprocessing Regression
Date of publicationNone
MaintainerPer Broberg, <pi.broberg@gmail.com>
LicenseGPL-3
Version1.48.0
http://home.swipnet.se/pibroberg/expression_hemsida1.html

View on Bioconductor

Functions

Files

ChangeLog
DESCRIPTION
NAMESPACE
R
R/Fstat.r R/GSEA.mean.t.R R/JT.test.r R/R2BASE.R R/R2mim.r R/Xprep.r R/Xprep.resid.R R/clin2mim.r R/cluster.q.r R/estimatep0.r R/fetchSignal.r R/firstpass.r R/fom.r R/fp.fn.r R/gap.r R/internal.R R/list.experiments.r R/list.intersection.p.r R/mat2TeX.r R/myclus.r R/normalise.r R/one.probeset.per.gene.R R/outlier.r R/p0.mom.r R/pava.fdr.r R/pava.r R/rank.genes.R R/rank.trend.r R/rsd.test.r R/samrocN.r R/samrocNboot.r R/samrocresult.R R/union.of.pways.R
build
build/vignette.rds
inst
inst/doc
inst/doc/samroc-ex.R
inst/doc/samroc-ex.Rnw
inst/doc/samroc-ex.pdf
man
man/Fstat.rd
man/GSEA.mean.t.rd
man/JT.test.rd
man/R2BASE.rd
man/R2mim.rd
man/Xprep.rd
man/Xprep.resid.rd
man/clin2mim.rd
man/cluster.q.rd
man/estimatep0.rd
man/fetchSignal.rd
man/firstpass.rd
man/fom.rd
man/fp.fn.rd
man/gap.rd
man/list.experiments.rd
man/list.intersection.p.rd
man/mat2TeX.rd
man/myclus.rd
man/normalise.rd
man/one.probeset.per.gene.rd
man/outlier.rd
man/p0.mom.rd
man/pava.fdr.rd
man/pava.rd
man/rank.genes.rd
man/rank.trend.rd
man/rsd.test.rd
man/samroc.result-class.rd
man/samrocn.rd
man/samrocnboot.rd
man/union.of.pways.rd
src
src/minigsea.c
src/newboot.c
src/samrocNboot.c
test
vignettes
vignettes/samroc-ex.Rnw
vignettes/samroc-ex.bib

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