SAGx: Statistical Analysis of the GeneChip

A package for retrieval, preparation and analysis of data from the Affymetrix GeneChip. In particular the issue of identifying differentially expressed genes is addressed.

AuthorPer Broberg
Date of publicationNone
MaintainerPer Broberg, <pi.broberg@gmail.com>
LicenseGPL-3
Version1.48.0
http://home.swipnet.se/pibroberg/expression_hemsida1.html

View on Bioconductor

Functions

Files

SAGx/ChangeLog
SAGx/DESCRIPTION
SAGx/NAMESPACE
SAGx/R
SAGx/R/Fstat.r
SAGx/R/GSEA.mean.t.R
SAGx/R/JT.test.r
SAGx/R/R2BASE.R
SAGx/R/R2mim.r
SAGx/R/Xprep.r
SAGx/R/Xprep.resid.R
SAGx/R/clin2mim.r
SAGx/R/cluster.q.r
SAGx/R/estimatep0.r
SAGx/R/fetchSignal.r
SAGx/R/firstpass.r
SAGx/R/fom.r
SAGx/R/fp.fn.r
SAGx/R/gap.r
SAGx/R/internal.R
SAGx/R/list.experiments.r
SAGx/R/list.intersection.p.r
SAGx/R/mat2TeX.r
SAGx/R/myclus.r
SAGx/R/normalise.r
SAGx/R/one.probeset.per.gene.R
SAGx/R/outlier.r
SAGx/R/p0.mom.r
SAGx/R/pava.fdr.r
SAGx/R/pava.r
SAGx/R/rank.genes.R
SAGx/R/rank.trend.r
SAGx/R/rsd.test.r
SAGx/R/samrocN.r
SAGx/R/samrocNboot.r
SAGx/R/samrocresult.R SAGx/R/union.of.pways.R
SAGx/build
SAGx/build/vignette.rds
SAGx/inst
SAGx/inst/doc
SAGx/inst/doc/samroc-ex.R
SAGx/inst/doc/samroc-ex.Rnw
SAGx/inst/doc/samroc-ex.pdf
SAGx/man
SAGx/man/Fstat.rd
SAGx/man/GSEA.mean.t.rd
SAGx/man/JT.test.rd
SAGx/man/R2BASE.rd
SAGx/man/R2mim.rd
SAGx/man/Xprep.rd
SAGx/man/Xprep.resid.rd
SAGx/man/clin2mim.rd
SAGx/man/cluster.q.rd
SAGx/man/estimatep0.rd
SAGx/man/fetchSignal.rd
SAGx/man/firstpass.rd
SAGx/man/fom.rd
SAGx/man/fp.fn.rd
SAGx/man/gap.rd
SAGx/man/list.experiments.rd
SAGx/man/list.intersection.p.rd
SAGx/man/mat2TeX.rd
SAGx/man/myclus.rd
SAGx/man/normalise.rd
SAGx/man/one.probeset.per.gene.rd
SAGx/man/outlier.rd
SAGx/man/p0.mom.rd
SAGx/man/pava.fdr.rd
SAGx/man/pava.rd
SAGx/man/rank.genes.rd
SAGx/man/rank.trend.rd
SAGx/man/rsd.test.rd
SAGx/man/samroc.result-class.rd
SAGx/man/samrocn.rd
SAGx/man/samrocnboot.rd
SAGx/man/union.of.pways.rd
SAGx/src
SAGx/src/minigsea.c
SAGx/src/newboot.c
SAGx/src/samrocNboot.c
SAGx/test
SAGx/vignettes
SAGx/vignettes/samroc-ex.Rnw
SAGx/vignettes/samroc-ex.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.