outlier: Identify outliers in the multivariate distribution

In SAGx: Statistical Analysis of the GeneChip

Description

A PCA model is fitted to data and two statistics as measures of extremity are calculated. These are the Hotelling t-square and DMODX, the first is a measure of how far away from the centre of the projection subspace the projection of the observation is. The second one measures how remote from the projection the actual observation is. SVD is done directly on the data matrix. The number of significant dimensions is defined as the number of eigenvalues greater than 1. Typically arrays are in different columns.

Usage

outlier(M)

Arguments

M

matrix

Value

Dataframe with columns Hotelling and DMODX

Author(s)

Per Broberg

References

Jackson, J.E. (1991) A User's Guide to Principal Components. Wiley

Examples

## Not run: 
# not run
ut<-outlier(M)
#[1] "The number of significant dimensions is 19"
colnames(ut)
#[1] "Hotelling" "DMODX"  

## End(Not run)

SAGx documentation built on Nov. 8, 2020, 8:18 p.m.