MANOR: CGH Micro-Array NORmalization

Importation, normalization, visualization, and quality control functions to correct identified sources of variability in array-CGH experiments.

AuthorPierre Neuvial <pierre.neuvial@genopole.cnrs.fr>, Philippe Hupe <philippe.hupe@curie.fr>
Date of publicationNone
MaintainerPierre Neuvial <pierre.neuvial@genopole.cnrs.fr>
LicenseGPL-2
Version1.46.0
http://bioinfo.curie.fr/projects/manor/index.html

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Files in this package

MANOR/DESCRIPTION
MANOR/NAMESPACE
MANOR/R
MANOR/R/arrayCGH2txt.R
MANOR/R/arrayTrend.R
MANOR/R/detectSB.R
MANOR/R/flag.arrayCGH.R MANOR/R/flag.summary.R MANOR/R/genome.plot.R MANOR/R/html.report.R MANOR/R/import.R MANOR/R/intensity.plot.R
MANOR/R/nem.R
MANOR/R/norm.R MANOR/R/quality.R MANOR/R/report.plot.R MANOR/R/sort.R MANOR/R/to.flag.R
MANOR/R/utils.R
MANOR/build
MANOR/build/vignette.rds
MANOR/data
MANOR/data/flags.RData
MANOR/data/qscores.RData
MANOR/data/spatial.RData
MANOR/inst
MANOR/inst/NEWS
MANOR/inst/doc
MANOR/inst/doc/MANOR.R
MANOR/inst/doc/MANOR.Rnw
MANOR/inst/doc/MANOR.pdf
MANOR/inst/extdata
MANOR/inst/extdata/edge.txt
MANOR/inst/extdata/gradient.gpr
MANOR/inst/system
MANOR/inst/system/checkDataObjects.R
MANOR/man
MANOR/man/MANOR-internal.Rd MANOR/man/arrayTrend.Rd MANOR/man/detectSB.Rd MANOR/man/flag.arrayCGH.Rd MANOR/man/flag.summary.Rd MANOR/man/flags.Rd MANOR/man/genome.plot.Rd MANOR/man/html.report.Rd MANOR/man/import.Rd MANOR/man/nem.Rd MANOR/man/norm.Rd MANOR/man/qscore.Rd MANOR/man/qscore.arrayCGH.Rd MANOR/man/qscore.summary.Rd MANOR/man/qscores.Rd MANOR/man/report.plot.Rd MANOR/man/sort.Rd MANOR/man/spatial.Rd MANOR/man/to.flag.Rd
MANOR/src
MANOR/src/Rnem_arg.c
MANOR/src/Rnem_exe.c
MANOR/src/exememo.c
MANOR/src/genmemo.h
MANOR/src/nem_alg.c
MANOR/src/nem_alg.h
MANOR/src/nem_arg.h
MANOR/src/nem_hlp.c
MANOR/src/nem_hlp.h
MANOR/src/nem_mod.c
MANOR/src/nem_mod.h
MANOR/src/nem_nei.c
MANOR/src/nem_nei.h
MANOR/src/nem_rnd.c
MANOR/src/nem_rnd.h
MANOR/src/nem_typ.h
MANOR/src/nem_ver.c
MANOR/src/nem_ver.h
MANOR/vignettes
MANOR/vignettes/MANOR.Rnw
MANOR/vignettes/MANOR.bib
MANOR/vignettes/html.sty
MANOR/vignettes/index.html
MANOR/vignettes/natbib.sty

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