sort: Sorting for normalized arrayCGH objects

In MANOR: CGH Micro-Array NORmalization

Description

Sorts clone-level information of a normalized arrayCGH object.

Usage

  ## S3 method for class 'arrayCGH'
sort(x, decreasing = FALSE, position.var="Position",
    chromosome.var="Chromosome", ...)

Arguments

x	an object of type arrayCGH.
decreasing	(for compatibility with sort class) currently unused.
position.var	name of position variable.
chromosome.var	name of chromosome variable.
...	further arguments to be passed to sort.

Note

People interested in tools for array-CGH analysis can visit our web-page: http://bioinfo.curie.fr.

Author(s)

Pierre Neuvial, [e-mail].

See Also

norm.arrayCGH

Examples

data(spatial)

## sort a normalized array by clone position
gradient.norm <- sort(gradient.norm)

report.plot(gradient.norm, main="Genomic profile after normalization")

MANOR documentation built on Nov. 8, 2020, 6:52 p.m.