hiReadsProcessor: Functions to process LM-PCR reads from 454/Illumina data

hiReadsProcessor contains set of functions which allow users to process LM-PCR products sequenced using any platform. Given an excel/txt file containing parameters for demultiplexing and sample metadata, the functions automate trimming of adaptors and identification of the genomic product. Genomic products are further processed for QC and abundance quantification.

Getting started

Package details

AuthorNirav V Malani <malnirav@gmail.com>
Bioconductor views Preprocessing Sequencing
MaintainerNirav V Malani <malnirav@gmail.com>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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hiReadsProcessor documentation built on Nov. 8, 2020, 5:43 p.m.