scPipe: pipeline for single cell RNA-seq data analysis

A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.

Package details

AuthorLuyi Tian
Bioconductor views GeneExpression GenomeAnnotation ImmunoOncology Preprocessing QualityControl RNASeq SequenceMatching Sequencing SingleCell Software Visualization
MaintainerLuyi Tian <[email protected]>
LicenseGPL (>= 2)
Version1.8.0
URL https://github.com/LuyiTian/scPipe
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("scPipe")

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scPipe documentation built on Oct. 31, 2019, 6:01 a.m.