Description Usage Arguments Value Author(s) Examples
Get or set gene_id_type
from a SingleCellExperiment object
1 2 3 4 5 6 7 8 9 10 11 | gene_id_type(object)
gene_id_type(object) <- value
gene_id_type.sce(object)
## S4 method for signature 'SingleCellExperiment'
gene_id_type(object)
## S4 replacement method for signature 'SingleCellExperiment'
gene_id_type(object) <- value
|
object |
A |
value |
Value to be assigned to corresponding object. |
the gene id type used by Biomart
gene id type string
Luyi Tian
1 2 3 4 5 6 7 8 9 10 | data("sc_sample_data")
data("sc_sample_qc")
sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data)))
organism(sce) = "mmusculus_gene_ensembl"
gene_id_type(sce) = "ensembl_gene_id"
QC_metrics(sce) = sc_sample_qc
demultiplex_info(sce) = cell_barcode_matching
UMI_dup_info(sce) = UMI_duplication
gene_id_type(sce)
|
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