UMI_duplication: UMI duplication statistics for a small sample scRNA-seq...
In scPipe: pipeline for single cell RNA-seq data analysis
Description
Usage
Format
Value
Author(s)
Source
Examples
Description
This data.frame contains UMI duplication statistics, where the
first column is the number of duplication, and the second column is the
count of UMIs.
Usage
1
Format
a data.frame instance, one row per cell.
Value
NULL, but makes a data frame with UMI dulication statistics
Author(s)
Luyi Tian
Source
Christin Biben (WEHI). She FACS sorted cells from several immune
cell types including B cells, granulocyte and some early progenitors.
Examples
1
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10
data("sc_sample_data")
data("sc_sample_qc")
sce = SingleCellExperiment(assays = list(counts =as.matrix(sc_sample_data)))
organism(sce) = "mmusculus_gene_ensembl"
gene_id_type(sce) = "ensembl_gene_id"
QC_metrics(sce) = sc_sample_qc
demultiplex_info(sce) = cell_barcode_matching
UMI_dup_info(sce) = UMI_duplication
head(UMI_dup_info(sce))
scPipe documentation built on Nov. 8, 2020, 8:28 p.m.
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Description Usage Format Value Author(s) Source Examples
Description
This data.frame contains UMI duplication statistics, where the first column is the number of duplication, and the second column is the count of UMIs.
Usage
1 |
Format
a data.frame instance, one row per cell.
Value
NULL, but makes a data frame with UMI dulication statistics
Author(s)
Luyi Tian
Source
Christin Biben (WEHI). She FACS sorted cells from several immune cell types including B cells, granulocyte and some early progenitors.
Examples
1 2 3 4 5 6 7 8 9 10 | data("sc_sample_data")
data("sc_sample_qc")
sce = SingleCellExperiment(assays = list(counts =as.matrix(sc_sample_data)))
organism(sce) = "mmusculus_gene_ensembl"
gene_id_type(sce) = "ensembl_gene_id"
QC_metrics(sce) = sc_sample_qc
demultiplex_info(sce) = cell_barcode_matching
UMI_dup_info(sce) = UMI_duplication
head(UMI_dup_info(sce))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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