plot_UMI_dup: Plot UMI duplication frequency
In scPipe: pipeline for single cell RNA-seq data analysis
Description
Usage
Arguments
Value
Examples
Description
Plot the UMI duplication frequency.
Usage
1
plot_UMI_dup(sce, log10_x = TRUE)
Arguments
sce
a SingleCellExperiment object
log10_x
whether to use log10 scale for x axis
Value
a line chart of the UMI duplication frequency
Examples
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data("sc_sample_data")
data("sc_sample_qc")
sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data)))
organism(sce) = "mmusculus_gene_ensembl"
gene_id_type(sce) = "ensembl_gene_id"
QC_metrics(sce) = sc_sample_qc
demultiplex_info(sce) = cell_barcode_matching
UMI_dup_info(sce) = UMI_duplication
plot_UMI_dup(sce)
scPipe documentation built on Nov. 8, 2020, 8:28 p.m.
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Description Usage Arguments Value Examples
Description
Plot the UMI duplication frequency.
Usage
1 | plot_UMI_dup(sce, log10_x = TRUE)
|
Arguments
sce |
a |
log10_x |
whether to use log10 scale for x axis |
Value
a line chart of the UMI duplication frequency
Examples
1 2 3 4 5 6 7 8 9 10 | data("sc_sample_data")
data("sc_sample_qc")
sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data)))
organism(sce) = "mmusculus_gene_ensembl"
gene_id_type(sce) = "ensembl_gene_id"
QC_metrics(sce) = sc_sample_qc
demultiplex_info(sce) = cell_barcode_matching
UMI_dup_info(sce) = UMI_duplication
plot_UMI_dup(sce)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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