Rfastp: An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing).

Rfastp is an R wrapper of fastp developed in c++. fastp performs quality control for fastq files. including low quality bases trimming, polyX trimming, adapter auto-detection and trimming, paired-end reads merging, UMI sequence/id handling. Rfastp can concatenate multiple files into one file (like shell command cat) and accept multiple files as input.

Package details

AuthorWei Wang [aut] (<https://orcid.org/0000-0002-3216-7118>), Ji-Dung Luo [ctb] (<https://orcid.org/0000-0003-0150-1440>), Thomas Carroll [cre, aut] (<https://orcid.org/0000-0002-0073-1714>)
Bioconductor views Preprocessing QualityControl Sequencing Software
MaintainerThomas Carroll <tc.infomatics@gmail.com>
LicenseGPL-3 + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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Rfastp documentation built on Nov. 8, 2020, 5:52 p.m.