Files in Rfastp

An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing).

cleanup.win

NAMESPACE

DESCRIPTION

cleanup

LICENSE

build/vignette.rds

src/main_fastp.cpp

src/Makevars.win

src/RcppExports.cpp

src/Makevars

src/FASTP/util.h

src/FASTP/evaluator.cpp

src/FASTP/unittest.cpp

src/FASTP/polyx.cpp

src/FASTP/processor.h

src/FASTP/jsonreporter.h

src/FASTP/filterresult.cpp

src/FASTP/unittest.h

src/FASTP/jsonreporter.cpp

src/FASTP/duplicate.cpp

src/FASTP/overlapanalysis.cpp

src/FASTP/common.h

src/FASTP/cmdline.h

src/FASTP/writerthread.cpp

src/FASTP/umiprocessor.h

src/FASTP/filterresult.h

src/FASTP/adaptertrimmer.h

src/FASTP/fastqreader.cpp

src/FASTP/writer.cpp

src/FASTP/htmlreporter.cpp

src/FASTP/overlapanalysis.h

src/FASTP/nucleotidetree.h

src/FASTP/options.cpp

src/FASTP/umiprocessor.cpp

src/FASTP/evaluator.h

src/FASTP/polyx.h

src/FASTP/sequence.cpp

src/FASTP/nucleotidetree.cpp

src/FASTP/duplicate.h

src/FASTP/sequence.h

src/FASTP/stats.cpp

src/FASTP/filter.h

src/FASTP/options.h

src/FASTP/read.h

src/FASTP/stats.h

src/FASTP/peprocessor.cpp

src/FASTP/seprocessor.h

src/FASTP/basecorrector.h

src/FASTP/read.cpp

src/FASTP/knownadapters.h

src/FASTP/htmlreporter.h

src/FASTP/writerthread.h

src/FASTP/writer.h

src/FASTP/threadconfig.h

src/FASTP/threadconfig.cpp

src/FASTP/basecorrector.cpp

src/FASTP/processor.cpp

src/FASTP/fastareader.h

src/FASTP/fastareader.cpp

src/FASTP/seprocessor.cpp

src/FASTP/adaptertrimmer.cpp

src/FASTP/fastqreader.h

src/FASTP/filter.cpp

src/FASTP/LICENSE

src/FASTP/peprocessor.h

src/FASTP/zlib/zconf.h

src/FASTP/zlib/crc32.h

src/FASTP/zlib/gzguts.h

src/FASTP/zlib/inffixed.h

src/FASTP/zlib/deflate.h

src/FASTP/zlib/inflate.h

src/FASTP/zlib/inffast.h

src/FASTP/zlib/zutil.h

src/FASTP/zlib/inftrees.h

src/FASTP/zlib/trees.h

src/FASTP/zlib/zlib.h

R/RcppExports.R R/wrappers.R R/Rfastp-package.R R/zzz.R

vignettes/fastp.bib

vignettes/Rfastp.Rmd man/qcSummary.Rd man/rfastp.Rd man/trimSummary.Rd man/catfastq.Rd man/curvePlot.Rd tests/testthat.R tests/testthat/test_rfastp.R inst/doc/Rfastp.R inst/doc/Rfastp.Rmd

inst/doc/Rfastp.html

inst/extdata/reads2.fastq.gz

inst/extdata/merged_R2.fastq.gz

inst/extdata/splited_003_R2.fastq.gz

inst/extdata/splited_004_R1.fastq.gz

inst/extdata/splited_002_R2.fastq.gz

inst/extdata/reference.fa

inst/extdata/reads1.fastq.gz

inst/extdata/Fox3_Std_small.fq.gz

inst/extdata/splited_001_R2.fastq.gz

inst/extdata/ex1_sorted.bam

inst/extdata/splited_001_R1.fastq.gz

inst/extdata/merged_R1.fastq.gz

inst/extdata/splited_002_R1.fastq.gz

inst/extdata/splited_003_R1.fastq.gz

inst/extdata/splited_004_R2.fastq.gz

Rfastp documentation built on Nov. 8, 2020, 5:52 p.m.