Description Usage Arguments Value Author(s) Examples
generate a data frame of the Fastq QC summary.
1 | qcSummary(json)
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json |
the output json of function rfastq. [json] |
a data frame.
Wei Wang
1 2 3 4 5 | outputPrefix <- tempfile(tmpdir = tempdir())
se_read1 <- system.file("extdata","Fox3_Std_small.fq.gz",package="Rfastp")
se_json_report <- rfastp(read1 = se_read1, outputFastq = outputPrefix,
thread = 4)
df_summary <- qcSummary(se_json_report)
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