qcSummary: Summary of Fastq Quality Control

Description Usage Arguments Value Author(s) Examples

View source: R/wrappers.R

Description

generate a data frame of the Fastq QC summary.

Usage

1
qcSummary(json)

Arguments

json

the output json of function rfastq. [json]

Value

a data frame.

Author(s)

Wei Wang

Examples

1
2
3
4
5
outputPrefix <- tempfile(tmpdir = tempdir())
se_read1 <- system.file("extdata","Fox3_Std_small.fq.gz",package="Rfastp")
se_json_report <- rfastp(read1 = se_read1, outputFastq = outputPrefix,
   thread = 4)
df_summary <- qcSummary(se_json_report)

Rfastp documentation built on Nov. 8, 2020, 5:52 p.m.