OperaMate: An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

OperaMate is a flexible R package dealing with the data generated by PerkinElmer's Opera High Content Screening System. The functions include the data importing, normalization and quality control, hit detection and function analysis.

AuthorChenglin Liu
Date of publicationNone
MaintainerChenglin Liu <cliu@sjtu.edu.cn>
LicenseGPL (>= 3)
Version1.6.0

View on Bioconductor

Files in this package

OperaMate/DESCRIPTION
OperaMate/NAMESPACE
OperaMate/R
OperaMate/R/cellData-class.R OperaMate/R/cellData-methods.R OperaMate/R/dataprocess.R OperaMate/R/expData-class.R OperaMate/R/expData-methods.R OperaMate/R/functions.R OperaMate/R/zzz.R
OperaMate/build
OperaMate/build/vignette.rds
OperaMate/data
OperaMate/data/demoCell.rda
OperaMate/data/demoCellNum.rda
OperaMate/data/platemap.rda
OperaMate/inst
OperaMate/inst/Test
OperaMate/inst/Test/Matrix
OperaMate/inst/Test/Matrix/130504-s1-02.txt
OperaMate/inst/Test/Matrix/130504-s1-03.txt
OperaMate/inst/Test/Matrix/Matrix.130506-s2-02.txt
OperaMate/inst/Test/Matrix/Matrix.130506-s2-03.txt
OperaMate/inst/Test/Matrix/Matrix.130508-s3-02.txt
OperaMate/inst/Test/Matrix/Matrix.130508-s3-03.txt
OperaMate/inst/Test/Matrix/Matrix.130607-s1-04.txt
OperaMate/inst/Test/Matrix/Matrix.130609-s2-04.txt
OperaMate/inst/Test/Matrix/Matrix.130611-s3-04.txt
OperaMate/inst/Test/Tab
OperaMate/inst/Test/Tab/Tab.130504-s1-01.txt
OperaMate/inst/Test/Tab/Tab.130506-s2-01.txt
OperaMate/inst/Test/Tab/Tab.130508-s3-01.txt
OperaMate/inst/Test/demoData
OperaMate/inst/Test/demoData/demoParam.txt
OperaMate/inst/Test/demoData/genemap.csv
OperaMate/inst/doc
OperaMate/inst/doc/OperaMate-manual.pdf
OperaMate/inst/doc/OperaMate-vignette.R
OperaMate/inst/doc/OperaMate-vignette.Rnw
OperaMate/inst/doc/OperaMate-vignette.pdf
OperaMate/inst/doc/param.txt
OperaMate/man
OperaMate/man/cellData-class.Rd OperaMate/man/cellLoad.Rd OperaMate/man/cellMean.Rd OperaMate/man/cellNorm.Rd OperaMate/man/cellNumLoad.Rd OperaMate/man/cellQC.Rd OperaMate/man/cellSig.Rd OperaMate/man/cellSigAnalysis.Rd OperaMate/man/cellSigAnalysisPlot.Rd OperaMate/man/cellSigPlot.Rd OperaMate/man/cellViz.Rd OperaMate/man/data.Rd OperaMate/man/expData-class.Rd OperaMate/man/generateReport.Rd OperaMate/man/loadAll.Rd OperaMate/man/nameParser.Rd OperaMate/man/operaMate.Rd OperaMate/man/parseTemplete.Rd
OperaMate/vignettes
OperaMate/vignettes/OperaMate-vignette.Rnw
OperaMate/vignettes/OperaMate-vignette.bib
OperaMate/vignettes/normplot.png
OperaMate/vignettes/qcplot.png
OperaMate/vignettes/sigplot.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.