OperaMate: An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

OperaMate is a flexible R package dealing with the data generated by PerkinElmer's Opera High Content Screening System. The functions include the data importing, normalization and quality control, hit detection and function analysis.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("OperaMate")
AuthorChenglin Liu
Bioconductor views CellBasedAssays Normalization Preprocessing QualityControl
Date of publicationNone
MaintainerChenglin Liu <cliu@sjtu.edu.cn>
LicenseGPL (>= 3)
Version1.6.0

View on Bioconductor

Functions

[, Man page
cellData Man page
cellData, Man page
[,cellData,character,ANY-method Man page
cellData-class Man page
cellData-method Man page
cellLoad Man page
cellLoad,cellData-method Man page
cellMean Man page
cellMean,cellData,cellData,character-method Man page
cellNorm Man page
cellNorm,cellData-method Man page
cellNumLoad Man page
cellNumLoad,cellData,cellData-method Man page
cellQC Man page
cellQC,cellData-method Man page
cellSig Man page
cellSigAnalysis Man page
cellSigAnalysisPlot Man page
cellSig,cellData-method Man page
cellSigPlot Man page
cellViz Man page
dataLoad Man page
dataLoad, Man page
dataLoad,expData-method Man page
demoData Man page
expData Man page
expData, Man page
[,expData,ANY,ANY-method Man page
expData-class Man page
expData-method Man page
generateReport Man page
loadAll Man page
nameParser Man page
onCellNum Man page
oneCell Man page
oneCellNum Man page
operaMate Man page
parseTemplete Man page
platemap Man page
show,cellData-method Man page
show,expData-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/cellData-class.R R/cellData-methods.R R/dataprocess.R R/expData-class.R R/expData-methods.R R/functions.R R/zzz.R
build
build/vignette.rds
data
data/demoCell.rda
data/demoCellNum.rda
data/platemap.rda
inst
inst/Test
inst/Test/Matrix
inst/Test/Matrix/130504-s1-02.txt
inst/Test/Matrix/130504-s1-03.txt
inst/Test/Matrix/Matrix.130506-s2-02.txt
inst/Test/Matrix/Matrix.130506-s2-03.txt
inst/Test/Matrix/Matrix.130508-s3-02.txt
inst/Test/Matrix/Matrix.130508-s3-03.txt
inst/Test/Matrix/Matrix.130607-s1-04.txt
inst/Test/Matrix/Matrix.130609-s2-04.txt
inst/Test/Matrix/Matrix.130611-s3-04.txt
inst/Test/Tab
inst/Test/Tab/Tab.130504-s1-01.txt
inst/Test/Tab/Tab.130506-s2-01.txt
inst/Test/Tab/Tab.130508-s3-01.txt
inst/Test/demoData
inst/Test/demoData/demoParam.txt
inst/Test/demoData/genemap.csv
inst/doc
inst/doc/OperaMate-manual.pdf
inst/doc/OperaMate-vignette.R
inst/doc/OperaMate-vignette.Rnw
inst/doc/OperaMate-vignette.pdf
inst/doc/param.txt
man
man/cellData-class.Rd man/cellLoad.Rd man/cellMean.Rd man/cellNorm.Rd man/cellNumLoad.Rd man/cellQC.Rd man/cellSig.Rd man/cellSigAnalysis.Rd man/cellSigAnalysisPlot.Rd man/cellSigPlot.Rd man/cellViz.Rd man/data.Rd man/expData-class.Rd man/generateReport.Rd man/loadAll.Rd man/nameParser.Rd man/operaMate.Rd man/parseTemplete.Rd
vignettes
vignettes/OperaMate-vignette.Rnw
vignettes/OperaMate-vignette.bib
vignettes/normplot.png
vignettes/qcplot.png
vignettes/sigplot.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.