operaMate: Data process and analysis pipeline
In OperaMate: An R package of Data Importing, Processing and Analysis for Opera High Content Screening System
Description
Usage
Arguments
Value
Examples
Description
A systematical pipeline for opera data importing, normalization, quality
control, hit detection, analysis, and visualization.
Usage
1
Arguments
configFile
the location of the file specifying all parameters
gDevice
the graphics device
...
addition arguments for graphics devices
Value
a list of three components: a list of cellData objects, the
annotated table of each well, and the enrichment analysis table
Examples
1
2
3
4
configFile <- file.path(system.file("Test", package = "OperaMate"),
"demoData", "demoParam.txt")
operaReport <- operaMate(configFile, gDevice = "png")
head(operaReport$report)
OperaMate documentation built on Nov. 17, 2017, 1:55 p.m.
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Description Usage Arguments Value Examples
Description
A systematical pipeline for opera data importing, normalization, quality control, hit detection, analysis, and visualization.
Usage
1 |
Arguments
configFile |
the location of the file specifying all parameters |
gDevice |
the graphics device |
... |
addition arguments for graphics devices |
Value
a list of three components: a list of cellData objects, the annotated table of each well, and the enrichment analysis table
Examples
1 2 3 4 | configFile <- file.path(system.file("Test", package = "OperaMate"),
"demoData", "demoParam.txt")
operaReport <- operaMate(configFile, gDevice = "png")
head(operaReport$report)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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