cellSigAnalysisPlot: The barplot of enrichment functions

In OperaMate: An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

Description

The barplot of enrichment functions

Usage

cellSigAnalysisPlot(chart, prefix = "", type = NULL, fill = "steelblue",
  outpath = getOption("opm.outpath"), ...)

Arguments

chart	data frame, the functional annotation chart
prefix	character, the prefix of figure name
type	selected domains from chart, e.g. BP.
fill	color of the bars
outpath	directory of output figures, default: getOption("opm.outpath")
...	other arguments for graphical devices

Value

Invisibly the ggplot2 function for barplot

Examples

data(demoCell)
genemap <- read.csv(file.path(system.file("Test", package = "OperaMate"),
"demoData", "genemap.csv"), stringsAsFactors = FALSE)
chart <- cellSigAnalysis(oneCell, genemap, organism = "mmusculus")
op <- options("device")
options("device" = "png")
cellSigAnalysisPlot(chart, type = "BP", outpath = tempdir())
options(op)

OperaMate documentation built on Nov. 17, 2017, 1:55 p.m.