generateReport: Report generation

In OperaMate: An R package of Data Importing, Processing and Analysis for Opera High Content Screening System

Description

Summarizes all results in the list of cellData objects, and writes out a report to file.

Usage

generateReport(lstCells, genemap = NULL, verbose = FALSE, file = NULL,
  outpath = getOption("opm.outpath"), plot = TRUE, ...)

Arguments

lstCells	a list of cellData objects
genemap	a data frame, the well-gene specification table
verbose	logical, detailed data will be provided if TRUE
file	the path of the file to generate to
outpath	a character string naming the location the figures to generate to
plot	if TRUE, plot barplot
...	arguments of the graphic device

Details

This function summarizes the information from all cellData objects, and visualizes the number of the hists if required.

Value

a data frame with annotated information of each well

Examples

data(demoCell)
genemap <- read.csv(file.path(system.file("Test", package = "OperaMate"),
"demoData", "genemap.csv"), stringsAsFactors = FALSE)
report <- generateReport(list(oneCell), genemap, verbose = FALSE,
plot = FALSE)
str(report)

OperaMate documentation built on Nov. 17, 2017, 1:55 p.m.