JMF47/recountNNLS: Transcript abundance linear modeling from compressed coverage information

This pacakge provides an interface to estimate transcript abundances of any samples quantified by the aligner rail. This method is a non negative least squares estimation that calculates the number of reads that originated from each transcript of the coding portion of the GencodeV25 transcriptome. The model does not require raw aligned bam files, but is content with compressed coverage statistics primarily stored in bigwig formats.

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Package details

AuthorJack Fu <[email protected]>
Bioconductor views Coverage Preprocessing RNASeq Sequencing StatisticalMethod
MaintainerJack Fu <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
JMF47/recountNNLS documentation built on May 9, 2018, 5:35 p.m.