getRseTx: Download and/or access quantified SRA projects
In JMF47/recountNNLS: Transcript abundance linear modeling from compressed coverage information
Description
Usage
Arguments
Value
Examples
Description
This function downloads and/or loads into R a
rangedSummarizedExperiment object for transcript level abundance
produced by the latest version of recountNNLS.
Usage
1
2
Arguments
project
A SRA project name for a project already curated in recount2.
tissue
A specific tissue type of interest. Relevant only to TCGA
and GTEX (SRP012682) samples. Defaults to NULL.
Defaults to NULL, i.e. no downloading.
download_path
Where the rse should be downloaded to if not NULL.
Value
Returns the path to downloaded object.
Examples
1
2
project = 'DRP000366'
getRseTx(project)
JMF47/recountNNLS documentation built on May 28, 2019, 12:42 p.m.
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Description Usage Arguments Value Examples
Description
This function downloads and/or loads into R a
rangedSummarizedExperiment object for transcript level abundance
produced by the latest version of recountNNLS.
Usage
1 2 |
Arguments
project |
A SRA project name for a project already curated in recount2. |
tissue |
A specific tissue type of interest. Relevant only to TCGA and GTEX (SRP012682) samples. Defaults to NULL. Defaults to NULL, i.e. no downloading. |
download_path |
Where the rse should be downloaded to if not NULL. |
Value
Returns the path to downloaded object.
Examples
1 2 | project = 'DRP000366'
getRseTx(project)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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