getJxCounts: Obtain Exonic Feature Counts
In JMF47/recountNNLS: Transcript abundance linear modeling from compressed coverage information
Description
Usage
Arguments
Value
Description
This function returns the coverage of the junction portion of the sufficient
features identified based on sequencing read length.
Usage
1
getJxCounts(input, pheno)
Arguments
input
Either a SRA project name (part of recount2) OR
the path to the rail output file containing junction information of the form 'cross_sample_results/junctions.tsv.gz'.
pheno
The phenotype matrix created by processPheno().
Value
A matrix containing the junction counts for the samples in pheno.
JMF47/recountNNLS documentation built on May 28, 2019, 12:42 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
This function returns the coverage of the junction portion of the sufficient features identified based on sequencing read length.
Usage
1 | getJxCounts(input, pheno)
|
Arguments
input |
Either a SRA project name (part of recount2) OR the path to the rail output file containing junction information of the form 'cross_sample_results/junctions.tsv.gz'. |
pheno |
The phenotype matrix created by processPheno(). |
Value
A matrix containing the junction counts for the samples in pheno.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.